| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 3478 |
| Australian | Zoogeographic realm | native | 6993 |
| Bay of Bengal | Sea/Bay/Gulf | native | 1479 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Godavari | River (basin) | native | 51036 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3478 |
| Indian Ocean | Sea/Bay/Gulf | native | 3478 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3478 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Mekong | River (basin) | native | 12693 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Oriental | Zoogeographic realm | native | 9706 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 3478 |
| West Philippine Sea | Sea/Bay/Gulf | native | 5399 |