| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 5218 |
| Arabian Sea | Sea/Bay/Gulf | native | 5218 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 2334 |
| Australian | Zoogeographic realm | native | 2847 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5218 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2334 |
| Ethiopian | Zoogeographic realm | native | 4756 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 2334 |
| Indian Ocean | Sea/Bay/Gulf | native | 2334 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5218 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5218 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5218 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5218 |
| Oriental | Zoogeographic realm | native | 41184 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5218 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 5218 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 129476 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 7223 |
| Yangtze Estuary | Sea/Bay/Gulf | native | 117603 |
| Zambezi | River (basin) | native | 39494 |