| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Indian Ocean | Sea/Bay/Gulf | native | 3132 |
| Indonesian Sea | Sea/Bay/Gulf | native | 9790 |
| North Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3132 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| Shark Bay | Sea/Bay/Gulf | native | 115321 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 9790 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115321 |