| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman and Nicobar Islands | Sea/Bay/Gulf | native | 118627 |
| Arabian (Persian) Gulf | Sea/Bay/Gulf | native | 47613 |
| Atulayan Bay | Sea/Bay/Gulf | native | 41469 |
| Bay of Bengal | Sea/Bay/Gulf | native | 118627 |
| Brooke's Point | Sea/Bay/Gulf | native | 114805 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Gulf of Oman | Sea/Bay/Gulf | native | 47613 |
| Indian Ocean | Sea/Bay/Gulf | native | 8630 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Pacific Ocean | Sea/Bay/Gulf | native | 108061 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Red Sea | Sea/Bay/Gulf | native | 120578 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45161 |
| South China Sea | Sea/Bay/Gulf | native | 81079 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 280 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |